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Here is a project that handles every step of the process.

There is an open source project called Homer that installs a suite of software to help with this including ScanTailor and tesseract-ocr. The final result is a searchable PDF. You can copy the text layer from the pdf (or the related html file created in the process) and paste it into an editor like Sigil to create an epub. Then, if you want mobi, convert using Calibre.

And there is a paper I wrote that explains the software in more detail.


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