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What I haven't used myself, but what you probably could use is Calibre's book comparison feature.

What I have done myself for comparisons of EPUBs on the level of the the HTML files using tidy to standardise the indentation (if necessary) and then using xxdiff to visually compare the files.

This is not the same as split screen view of the rendered file. I agree that would sometimes be useful, but the same (pixel) arrangements can be achieved in an unlimited number of ways. A comparison on the basis of the actual text content (to find out e.g. which scan typos were fixed in which version) would have to do so based on versions of the ebook data without the formatting as well.


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